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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_79074780_79076259_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79074780 - 79076259
Intron Length:
1480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTAGT
5'SS Class:
major
3'SS Sequence:
CTTTCTTCTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATTTAATAACT
Flanking Amino Acid:
HLWDYLYSMTVSSCGELEPE
Intron Amino Acid Position:
898

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
74.8
41.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.6
0.62
1
79.2
26.8
Minor 5ss
36.5
-1.5
3
52.2
44.2
Minor BPS
61.1
0.43
1.9
83.45
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003907
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004003
78962807 - 79190527
227721