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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_79082943_79087172_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79082943 - 79087172
Intron Length:
4230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
CTCTCCTTAAAA
Flanking Amino Acid:
QIYHIIRLNEEYLKEQLSCE
Intron Amino Acid Position:
1165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
74.9
37
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
65.4
0.35
1.1
67.3
31.5
Minor 5ss
30.2
-2.3
3.3
38.5
46.8
Minor BPS
74.1
0.75
1.4
76.43
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003907
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004003
78962807 - 79190527
227721