Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_79229064_79254009_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

79229064 - 79254009

Intron Length:

24946

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTTAT

U12 Branch Point Sequence:

TTTTTCTTACAG

Flanking Amino Acid:

NQKRYEALGEIITKYVYGLL

Intron Amino Acid Position:

104

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.8

26.2

Major BPS

0.47

1.2

61.1

45.5

Major PPT

96.2

1.04

0.5

91.9

19.1

Minor 5ss

41.1

-1

2.5

50.4

46.1

Minor BPS

63.2

0.28

1.8

72.05

40.8

Associated Gene:

Gene:

FAM172A

Ensembl Gene ID:

ENSAPLG00000004055

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004180

79206564 - 79452504

245941