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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_79261644_79326750_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79261644 - 79326750
Intron Length:
65107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTAAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTCTTCTAAACC
Flanking Amino Acid:
QIPYIKRAVEEGYGVIVLNP
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
70.2
0.45
1
64.1
40.6
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
61.9
0.35
1.7
69.02
43.1

Associated Gene:

Gene:
FAM172A
Ensembl Gene ID:
ENSAPLG00000004055
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004180
79206564 - 79452504
245941