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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_79386275_79389555_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79386275 - 79389555
Intron Length:
3281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTGGCTTAGCA
Flanking Amino Acid:
GKTIREWMRENCCNWVSSSE
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
79
0.65
0.9
73.7
35.9
Minor 5ss
25.6
-2.8
3
30.5
42.8
Minor BPS
57
0.22
2.1
75.03
42.8

Associated Gene:

Gene:
FAM172A
Ensembl Gene ID:
ENSAPLG00000004055
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004180
79206564 - 79452504
245941