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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_79633184_79636061_F

Intron Information:

Intron Rank:
149791
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
79633184 - 79636061
Intron Length:
2878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTAT
5'SS Class:
strong_major
3'SS Sequence:
CCACCATGTAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CTGTCTTCCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
34.9
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
52.4
0.06
1.1
51.3
35.9
Minor 5ss
55.7
0.19
2.5
72.7
44.5
Minor BPS
49
-0
2
61.79
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030589
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020800
79632893 - 79637183
4291