Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7966152_8034271_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7966152 - 8034271

Intron Length:

68120

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTCAA

5'SS Class:

strong_major

3'SS Sequence:

GAAAACACCACAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AAAACAC

U12 Branch Point Sequence:

TGTTCTGGAAAA

Flanking Amino Acid:

KNTQVKDSDQSQMKNLGREC

Intron Amino Acid Position:

193

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

1.3

74.1

38.3

Major BPS

47.8

-0.1

53.1

30.9

Major PPT

50.6

0.02

40.2

38.3

Minor 5ss

28.9

-2.4

2.6

32.6

Minor BPS

-0.1

2.2

66.32

39.8

Associated Gene:

Gene:

SETBP1

Ensembl Gene ID:

ENSAPLG00000017129

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042815

7827766 - 8074580

246815