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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_796713_797250_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
796713 - 797250
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
CATCCCCTAACG
Flanking Amino Acid:
PRRPRGLGRGSSPVQWRREG
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
77
0.61
0.7
68.9
31.6
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
57.8
0.11
1.8
63.21
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005326
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041265
793239 - 806728
13490