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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_797351_817034_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
797351 - 817034
Intron Length:
19684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACAC
5'SS Class:
major
3'SS Sequence:
TCTGCCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
GATAACTCACTT
Flanking Amino Acid:
GHIAAEERRKMHSPTRGLGR
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
66
40.1
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
71.7
0.49
0.8
62.2
34.7
Minor 5ss
30.9
-2.2
3.3
41.2
45.5
Minor BPS
44.3
-0.3
1.9
60.42
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005326
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005506
793239 - 817430
24192