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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_79779857_79781247_R

Intron Information:

Intron Rank:
135810
Intron Class:
major
Intron Phase:
Intron Coordinates:
79779857 - 79781247
Intron Length:
1391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTGCT
5'SS Class:
major
3'SS Sequence:
CTTGCATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
CTTTCCCTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.3
71.5
38.6
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
71.7
0.49
0.9
62.3
38.8
Minor 5ss
36.8
-1.5
3.1
50.8
45.6
Minor BPS
70.7
0.65
1.7
79.96
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020463
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034787
79778668 - 79781368
2701