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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_79869493_79886676_R

Intron Information:

Intron Rank:
139126
Intron Class:
major
Intron Phase:
Intron Coordinates:
79869493 - 79886676
Intron Length:
17184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTAA
5'SS Class:
strong_major
3'SS Sequence:
AGTCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTCAGACTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.1
80.2
30.6
Major BPS
80
0.75
1
78.6
31
Major PPT
81.1
0.7
0.8
77.7
36.1
Minor 5ss
45.1
-0.5
2.6
58.1
46.5
Minor BPS
45.7
-0.2
2.3
70.74
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022323
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026189
79861304 - 79887427
26124