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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_79953495_79965077_R

Intron Information:

Intron Rank:
137126
Intron Class:
major
Intron Phase:
Intron Coordinates:
79953495 - 79965077
Intron Length:
11583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
27.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86
0.81
0.8
77.6
40.7
Minor 5ss
38.2
-1.3
3
48.6
47.1
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021272
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033834
79924781 - 79965978
41198
ENSAPLT00000017448
79951690 - 79965978
14289