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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_79965121_79965308_R

Intron Information:

Intron Rank:
137127
Intron Class:
major
Intron Phase:
Intron Coordinates:
79965121 - 79965308
Intron Length:
188

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ACT|GCAAGTACA
5'SS Class:
major
3'SS Sequence:
TTCTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGATTTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.5
73.4
37.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.7
0.87
0.6
84.5
23.3
Minor 5ss
28.6
-2.5
3.8
44.7
42.7
Minor BPS
60.9
0.32
1.4
67.66
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021272
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030929
79964117 - 79965978
1862
ENSAPLT00000017448
79951690 - 79965978
14289
ENSAPLT00000033834
79924781 - 79965978
41198