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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80157921_80174452_R

Intron Information:

Intron Rank:
146979
Intron Class:
major
Intron Phase:
Intron Coordinates:
80157921 - 80174452
Intron Length:
16532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTGAGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TATTCCTTGAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
67.5
0.39
1.1
65.2
40.3
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
68
0.42
1.7
71.62
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026374
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030528
80157765 - 80177463
19699