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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80197790_80198843_R

Intron Information:

Intron Rank:
138686
Intron Class:
major
Intron Phase:
Intron Coordinates:
80197790 - 80198843
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCACACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCCTTCTAAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
80.7
0.69
0.8
76.6
31.1
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
59.1
0.28
1.7
65.77
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022125
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029380
80197653 - 80199031
1379