Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_8034356_8073919_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8034356 - 8073919

Intron Length:

39564

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTCTTATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTCAG

U12 Branch Point Sequence:

TCTCTCTTATAG

Flanking Amino Acid:

EEDRSHSKKKGKVIGDAKLL

Intron Amino Acid Position:

165

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.3

1.07

0.7

84.4

33.5

Major BPS

68.2

0.45

1.5

77.7

37.1

Major PPT

84.8

0.78

0.7

80.3

25.2

Minor 5ss

36.9

-1.5

51.2

45.2

Minor BPS

49.9

-0.1

1.8

57.54

43.9

Associated Gene:

Gene:

SETBP1

Ensembl Gene ID:

ENSAPLG00000017129

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042815

7827766 - 8074580

246815

ENSAPLT00000025657

7827766 - 8074580

246815