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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80350848_80354547_R

Intron Information:

Intron Rank:
134225
Intron Class:
major
Intron Phase:
Intron Coordinates:
80350848 - 80354547
Intron Length:
3700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATTAGG
5'SS Class:
major
3'SS Sequence:
TTCCTCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
ATTTACTAAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
67.3
43.6
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
78.8
0.65
0.9
76.3
32.3
Minor 5ss
35.3
-1.7
2.7
39.8
40.7
Minor BPS
57.4
0.09
1.9
66.68
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019507
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026937
80349938 - 80354775
4838