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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80355970_80367927_R

Intron Information:

Intron Rank:
134227
Intron Class:
major
Intron Phase:
Intron Coordinates:
80355970 - 80367927
Intron Length:
11958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGAGTTC
5'SS Class:
major
3'SS Sequence:
TTTTCTCCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TTTTCTCCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
67.2
39.2
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
85.5
0.8
0.7
80.7
24.6
Minor 5ss
39.3
-1.2
3.7
57.8
47.2
Minor BPS
48.4
-0.1
2.2
72.2
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019507
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032857
80349938 - 80382621
32684