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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80368133_80382499_R

Intron Information:

Intron Rank:
134228
Intron Class:
major
Intron Phase:
Intron Coordinates:
80368133 - 80382499
Intron Length:
14367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATAATTTTACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
72.3
37.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
80.6
0.69
0.8
75.1
33.3
Minor 5ss
47
-0.3
3.1
66.9
44.7
Minor BPS
49.1
-0
1.5
57.4
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019507
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032857
80349938 - 80382621
32684