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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80446666_80447614_R

Intron Information:

Intron Rank:
151397
Intron Class:
major
Intron Phase:
Intron Coordinates:
80446666 - 80447614
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GCCTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
ACTCCAATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1.2
78.8
35.5
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
81.2
0.7
0.8
72.5
37.7
Minor 5ss
30.7
-2.2
3.1
42.2
44.4
Minor BPS
47.6
-0.1
2
67.99
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029003
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047928
80446274 - 80448727
2454