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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80454527_80457169_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80454527 - 80457169
Intron Length:
2643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
GATGGGTTATCA
Flanking Amino Acid:
HKDVLIGQERDDDNSEEGLH
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
77.8
0.62
0.8
70.3
36.4
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
40.2
-0.7
2.5
52.79
45.2

Associated Gene:

Gene:
ARRDC3
Ensembl Gene ID:
ENSAPLG00000013315
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013899
80454247 - 80464954
10708