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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80459835_80461094_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80459835 - 80461094
Intron Length:
1260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTAATTAAAC
Flanking Amino Acid:
HIDINTPSLLSPQAGTKEKT
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
86.3
28.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
92.5
0.96
0.6
88.3
21.4
Minor 5ss
39.6
-1.2
3.2
55.5
42.8
Minor BPS
57.8
0.22
1.9
73.02
36.7

Associated Gene:

Gene:
ARRDC3
Ensembl Gene ID:
ENSAPLG00000013315
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013899
80454247 - 80464954
10708