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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80535742_80543644_R

Intron Information:

Intron Rank:
89
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80535742 - 80543644
Intron Length:
7903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
FDDLIFALKTGAGLSVSDNE
Intron Amino Acid Position:
6194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.6
30.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.8
0.81
0.8
84.1
30.9
Minor 5ss
27.7
-2.6
3
31.2
36.9
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457