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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80577033_80590257_R

Intron Information:

Intron Rank:
86
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80577033 - 80590257
Intron Length:
13225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGCTTCTGATTT
Flanking Amino Acid:
DIFRGRTNAAEIPLVLYLFA
Intron Amino Acid Position:
6030

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
82.1
0.72
0.9
73.4
41
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
51.2
0.12
1.7
68.88
42.5

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457