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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80617664_80627041_R

Intron Information:

Intron Rank:
84
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80617664 - 80627041
Intron Length:
9378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CATTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TCTGCATTATTT
Flanking Amino Acid:
LCQFSWMLIQAVNFWYVLVM
Intron Amino Acid Position:
5918

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1.1
77.3
37.8
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
83.8
0.76
0.8
80.8
36.1
Minor 5ss
35.1
-1.7
2.8
45
42.9
Minor BPS
51.4
0.12
2
72.56
44.8

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457