Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80627159_80688281_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

80627159 - 80688281

Intron Length:

61123

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCCTTATAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

TTTTCCCTTATA

Flanking Amino Acid:

HMMVACLGTQISFLASAYLS

Intron Amino Acid Position:

5879

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.9

1.01

0.7

23.7

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

86.1

0.81

0.6

81.2

Minor 5ss

32.8

-2

2.9

39.7

45.8

Minor BPS

0.4

1.9

80.29

35.1

Associated Gene:

Gene:

ADGRV1

Ensembl Gene ID:

ENSAPLG00000008200

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008578

80535623 - 80807079

271457