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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80690978_80692342_R

Intron Information:

Intron Rank:
81
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80690978 - 80692342
Intron Length:
1365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTATTTTA
5'SS Class:
major
3'SS Sequence:
TTTTGTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
AATTTTGTAAAT
Flanking Amino Acid:
LCLLWNQAAESWLSDSGFCK
Intron Amino Acid Position:
5791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
78.1
32.1
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
89.7
0.89
0.7
85
29.8
Minor 5ss
40.2
-1.1
2.7
50.8
45.5
Minor BPS
50.2
0.08
2
72.15
38.8

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457