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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80692910_80694150_R

Intron Information:

Intron Rank:
79
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80692910 - 80694150
Intron Length:
1241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCATTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTCATTTATCT
Flanking Amino Acid:
TGMMCGLPGERGKNILDSCP
Intron Amino Acid Position:
5661

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.2
83.2
30.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
73.4
0.53
0.9
69.1
35.7
Minor 5ss
30.5
-2.2
2.5
33.7
41.5
Minor BPS
60.8
0.42
1.8
82.49
38.6

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457