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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80694336_80694903_R

Intron Information:

Intron Rank:
78
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80694336 - 80694903
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCACAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCTCTTCACA
Flanking Amino Acid:
LTAVMHIINKVTDVGEKQLL
Intron Amino Acid Position:
5600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
84.2
33.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
67.3
0.39
0.9
63.3
31.5
Minor 5ss
44.7
-0.6
3.1
66
45.2
Minor BPS
67.6
0.55
1.7
80.35
35.4

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457