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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80703864_80706330_R

Intron Information:

Intron Rank:
73
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
80703864 - 80706330
Intron Length:
2467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAGCATGA
5'SS Class:
weak_major
3'SS Sequence:
TTTTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GCTCACTCAACT
Flanking Amino Acid:
YWYLYTFPLLMSGFQTAEIE
Intron Amino Acid Position:
5003

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.1
0.12
1.3
52.6
41.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
89.9
0.9
0.7
88.4
28.7
Minor 5ss
43.9
-0.7
3.3
59.3
45.7
Minor BPS
54.9
0.23
1.8
72.08
44

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457