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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80709153_80710023_R

Intron Information:

Intron Rank:
70
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
80709153 - 80710023
Intron Length:
871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACTCTCA
5'SS Class:
weak_major
3'SS Sequence:
AAACTCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTTTGTTAACT
Flanking Amino Acid:
RIQGTLGNITVYWEIHSESD
Intron Amino Acid Position:
4709

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.3
0.24
1.2
52.9
40.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.7
0.42
1
63.7
41.6
Minor 5ss
43.6
-0.7
3
57
47.2
Minor BPS
69.1
0.68
2
88.23
36.9

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457