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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80710174_80711783_R

Intron Information:

Intron Rank:
69
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80710174 - 80711783
Intron Length:
1610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTCAT
5'SS Class:
major
3'SS Sequence:
TGCTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ACATTTCTAATT
Flanking Amino Acid:
DPKANNVTLIIQKFGDPNGI
Intron Amino Acid Position:
4659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
73.4
37.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
88.2
0.86
0.7
83.2
32
Minor 5ss
37.7
-1.4
3.1
51.9
39.9
Minor BPS
52.7
0.16
1.6
67
38.3

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457