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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80713242_80713876_R

Intron Information:

Intron Rank:
66
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80713242 - 80713876
Intron Length:
635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTTCTCTCCATA
Flanking Amino Acid:
IYISIIDDEESEFAEQFEIQ
Intron Amino Acid Position:
4518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
88.9
24.6
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
78.8
0.65
0.8
73.1
30.8
Minor 5ss
37.5
-1.4
2.8
51.2
45.3
Minor BPS
49.5
-0
1.9
68.51
38.2

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457