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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80717357_80717723_R

Intron Information:

Intron Rank:
63
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80717357 - 80717723
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACTAGAT
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
LMQITEEDKWVNITIVRSRG
Intron Amino Acid Position:
4324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.1
59
40.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.1
0.83
0.6
85.7
21.4
Minor 5ss
30.7
-2.2
3.6
38.2
46.7
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457