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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80717910_80718047_R

Intron Information:

Intron Rank:
62
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80717910 - 80718047
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TATCTTTCAATA
Flanking Amino Acid:
RQSAAVVLIQAVDDNHPEEK
Intron Amino Acid Position:
4262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
82.1
30.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
92.4
0.95
0.6
85.4
29.3
Minor 5ss
44.8
-0.6
2.7
59.5
45.1
Minor BPS
56.2
0.19
1.5
65.78
34.5

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457