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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80718187_80719658_R

Intron Information:

Intron Rank:
61
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80718187 - 80719658
Intron Length:
1472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTGTTCTTATCT
Flanking Amino Acid:
SGNYNGTALISLTRGPGIFG
Intron Amino Acid Position:
4215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
76.7
33.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.3
0.82
0.7
81.5
29.3
Minor 5ss
29.2
-2.4
2.8
33.9
41.6
Minor BPS
66.1
0.58
1.6
78.93
43.7

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457