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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80719783_80720409_R

Intron Information:

Intron Rank:
60
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80719783 - 80720409
Intron Length:
627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGAAT
5'SS Class:
major
3'SS Sequence:
GTTCTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
AGDAEISPVNGQAIIIIMGD
Intron Amino Acid Position:
4174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
73.7
36.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.4
0.77
0.8
79.4
32.6
Minor 5ss
33.4
-1.9
3.3
44.8
44.5
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457