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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80721966_80722611_R

Intron Information:

Intron Rank:
58
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80721966 - 80722611
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTCGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTCTTTATTC
Flanking Amino Acid:
VGVFGFEEKNVTVKEPQTPD
Intron Amino Acid Position:
4080

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
76.9
34.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
77.3
0.61
1
77.2
36.7
Minor 5ss
40.8
-1
3
53.8
43.6
Minor BPS
66.8
0.51
1.5
73.5
38.4

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457