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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80724321_80725102_R

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80724321 - 80725102
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGACATTTAAAA
Flanking Amino Acid:
ITSVMITILPDNVPELQEGF
Intron Amino Acid Position:
3901

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
71.2
40.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
92.1
0.95
0.7
85.1
34.9
Minor 5ss
34.9
-1.7
2.9
52.3
44.3
Minor BPS
51.5
0.04
1.6
61.33
37.7

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457