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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80725309_80727071_R

Intron Information:

Intron Rank:
54
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
80725309 - 80727071
Intron Length:
1763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCAATAGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
ACATCCTGATTT
Flanking Amino Acid:
SLFVKVTEPEEVNSTTVTLQ
Intron Amino Acid Position:
3832

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.6
41.7
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
50.5
0.01
1.7
60.3
39.3
Minor 5ss
37.9
-1.4
3
50.1
46.1
Minor BPS
53.2
0.18
1.7
68.17
42.8

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457