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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80727328_80730085_R

Intron Information:

Intron Rank:
53
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80727328 - 80730085
Intron Length:
2758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTACAACCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTACAA
U12 Branch Point Sequence:
TCTCCCTCTACA
Flanking Amino Acid:
TSDVFPASGMITFSEGQALS
Intron Amino Acid Position:
3747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
81.4
31.6
Major BPS
61
0.27
1.1
69.2
36.3
Major PPT
67.7
0.4
0.9
63.5
36.9
Minor 5ss
43.6
-0.7
2.6
56.3
42.5
Minor BPS
55.5
0.17
1.9
69.55
42.2

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457