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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80732073_80732277_R

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80732073 - 80732277
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCCATGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
ATCACTAAAAAA
Flanking Amino Acid:
IHVFMPPSGLVHVLLAGKDI
Intron Amino Acid Position:
3555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
71.6
0.49
0.9
67
34.4
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
42.8
-0.5
1.9
52.49
39.3

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457