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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80733896_80734416_R

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80733896 - 80734416
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATCTA
5'SS Class:
major
3'SS Sequence:
ATTTCCCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
ATTTCCCTCACA
Flanking Amino Acid:
AFMPGHRLLWIQTLSVLDTR
Intron Amino Acid Position:
3394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
71.3
40.5
Major BPS
66.4
0.41
1
61.3
37
Major PPT
79.7
0.67
0.8
73.3
31
Minor 5ss
36.7
-1.5
3.1
41.4
45.1
Minor BPS
61.4
0.35
2.1
78.72
37.5

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457