Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80734561_80734638_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

80734561 - 80734638

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTTTGTTTT

5'SS Class:

weak_major

3'SS Sequence:

ATTCTTCTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTTTATTC

Flanking Amino Acid:

KGVFVPVEVNNFSMWNPTSC

Intron Amino Acid Position:

3346

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.8

0.4

1.2

74.7

35.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

82.1

0.72

0.8

76.6

31.4

Minor 5ss

53.6

0.12

2.4

72.8

36.6

Minor BPS

67.3

0.52

1.5

77.16

33.3

Associated Gene:

Gene:

ADGRV1

Ensembl Gene ID:

ENSAPLG00000008200

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008578

80535623 - 80807079

271457