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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80736751_80738329_R

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80736751 - 80738329
Intron Length:
1579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
GTCTCAATAACA
Flanking Amino Acid:
IVLEEGVRFKTLHISAVLDE
Intron Amino Acid Position:
3188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74
30.6
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
79
0.65
1
78
40.1
Minor 5ss
38.3
-1.3
3
50.5
46.1
Minor BPS
56.6
0.2
1.9
70.69
40.9

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457