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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80739221_80739735_R

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80739221 - 80739735
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAATCTCA
5'SS Class:
major
3'SS Sequence:
GTTTCAACGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TGTGTTTCAACG
Flanking Amino Acid:
LEAQLGLDFNTLFFADGERH
Intron Amino Acid Position:
3053

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.1
63.4
37.3
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
60.3
0.23
1
53
41.7
Minor 5ss
46.6
-0.3
2.8
61.6
43
Minor BPS
52.1
-0
1.7
59.54
42.7

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457