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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80739863_80740352_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80739863 - 80740352
Intron Length:
490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
VRGVIEWEGTKFEVSESHGN
Intron Amino Acid Position:
3010

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.1
0.77
0.8
82.9
32.8
Minor 5ss
40.5
-1.1
3
54
37
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457