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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80740432_80742923_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80740432 - 80742923
Intron Length:
2492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAACAT
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGTTCTTTAATT
Flanking Amino Acid:
NHSTSSPPKLDVEGLASQIV
Intron Amino Acid Position:
2984

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
66.7
38.5
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
90.4
0.91
0.6
89.7
18.7
Minor 5ss
33.1
-1.9
3.3
44.6
44.3
Minor BPS
84.7
1.17
0.9
92.55
29.6

Associated Gene:

Gene:
ADGRV1
Ensembl Gene ID:
ENSAPLG00000008200
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008578
80535623 - 80807079
271457