Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80743018_80743583_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

80743018 - 80743583

Intron Length:

566

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAACCTCT

5'SS Class:

weak_major

3'SS Sequence:

TTGTGTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTGCAT

U12 Branch Point Sequence:

ATGTATTGCATT

Flanking Amino Acid:

SVAINITILEDDIPEVQEFF

Intron Amino Acid Position:

2953

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.9

0.63

1.2

72.3

40.1

Major BPS

66.2

0.4

1.4

77.4

37.3

Major PPT

85.6

0.8

80.6

Minor 5ss

57.2

0.24

2.5

74.8

41.2

Minor BPS

44.7

-0.3

63.78

41.1

Associated Gene:

Gene:

ADGRV1

Ensembl Gene ID:

ENSAPLG00000008200

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023434

80738928 - 80801547

62620

ENSAPLT00000008578

80535623 - 80807079

271457