About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_80758439_80759830_R


Intron Information:

Intron Rank:
26

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
80758439 - 80759830

Intron Length:
1392

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTTAGAAAG

5'SS Class:
major

3'SS Sequence:
GTTTTCCACTTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CATAAAT

U12 Branch Point Sequence:
AGTACATAAATT

Flanking Amino Acid:
EDGYSNITLQVVRTHGSLSE

Intron Amino Acid Position:
1942

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79.1
0.69
1.1
72.8
38.2

Major BPS
62.2
0.3
1.1
68.9
33

Major PPT
72.3
0.5
0.9
71
34.9

Minor 5ss
29.2
-2.4
2.6
31.6
42.3

Minor BPS
49.3
0.02
1.9
69.37
41.3

Associated Gene:

Gene:
ADGRV1

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

80738928 - 80801547
62620

80535623 - 80807079
271457